template function
Learning on Persistence Diagrams as Radon Measures
Elchesen, Alex, Hartsock, Iryna, Perea, Jose A., Rask, Tatum
Persistence diagrams are common descriptors of the topological structure of data appearing in various classification and regression tasks. They can be generalized to Radon measures supported on the birth-death plane and endowed with an optimal transport distance. Examples of such measures are expectations of probability distributions on the space of persistence diagrams. In this paper, we develop methods for approximating continuous functions on the space of Radon measures supported on the birth-death plane, as well as their utilization in supervised learning tasks. Indeed, we show that any continuous function defined on a compact subset of the space of such measures (e.g., a classifier or regressor) can be approximated arbitrarily well by polynomial combinations of features computed using a continuous compactly supported function on the birth-death plane (a template). We provide insights into the structure of relatively compact subsets of the space of Radon measures, and test our approximation methodology on various data sets and supervised learning tasks.
Chatter Diagnosis in Milling Using Supervised Learning and Topological Features Vector
Yesilli, Melih C., Tymochko, Sarah, Khasawneh, Firas A., Munch, Elizabeth
Chatter detection has become a prominent subject of interest due to its effect on cutting tool life, surface finish and spindle of machine tool. Most of the existing methods in chatter detection literature are based on signal processing and signal decomposition. In this study, we use topological features of data simulating cutting tool vibrations, combined with four supervised machine learning algorithms to diagnose chatter in the milling process. Persistence diagrams, a method of representing topological features, are not easily used in the context of machine learning, so they must be transformed into a form that is more amenable. Specifically, we will focus on two different methods for featurizing persistence diagrams, Carlsson coordinates and template functions. In this paper, we provide classification results for simulated data from various cutting configurations, including upmilling and downmilling, in addition to the same data with some added noise. Our results show that Carlsson Coordinates and Template Functions yield accuracies as high as 96% and 95%, respectively. We also provide evidence that these topological methods are noise robust descriptors for chatter detection.
Adaptive template systems: Data-driven feature selection for learning with persistence diagrams
Feature extraction from persistence diagrams, as a tool to enrich machine learning techniques, has received increasing attention in recent years. In this paper we explore an adaptive methodology to localize features in persistent diagrams, which are then used in learning tasks. Specifically, we investigate three algorithms, CDER, GMM and HDBSCAN, to obtain adaptive template functions/features. Said features are evaluated in three classification experiments with persistence diagrams. Namely, manifold, human shapes and protein classification. The main conclusion of our analysis is that adaptive template systems, as a feature extraction technique, yield competitive and often superior results in the studied examples. Moreover, from the adaptive algorithms here studied, CDER consistently provides the most reliable and robust adaptive featurization.
Topological Feature Vectors for Chatter Detection in Turning Processes
Yesilli, Melih C., Khasawneh, Firas A., Otto, Andreas
Machining processes are most accurately described using complex dynamical systems that include nonlinearities, time delays and stochastic effects. Due to the nature of these models as well as the practical challenges which include time-varying parameters, the transition from numerical/analytical modeling of machining to the analysis of real cutting signals remains challenging. Some studies have focused on studying the time series of cutting processes using machine learning algorithms with the goal of identifying and predicting undesirable vibrations during machining referred to as chatter. These tools typically decompose the signal using Wavelet Packet Transforms (WPT) or Ensemble Empirical Mode Decomposition (EEMD). However, these methods require a significant overhead in identifying the feature vectors before a classifier can be trained. In this study, we present an alternative approach based on featurizing the time series of the cutting process using its topological features. We utilize support vector machine classifier combined with feature vectors derived from persistence diagrams, a tool from persistent homology, to encode distinguishing characteristics based on embedding the time series as a point cloud using Takens embedding. We present the results for several choices of the topological feature vectors, and we compare our results to the WPT and EEMD methods using experimental time series from a turning cutting test. Our results show that in most cases combining the TDA-based features with a simple Support Vector Machine (SVM) yields accuracies that either exceed or are within the error bounds of their WPT and EEMD counterparts.
Approximating Continuous Functions on Persistence Diagrams Using Template Functions
Perea, Jose A., Munch, Elizabeth, Khasawneh, Firas A.
The persistence diagram is an increasingly useful tool arising from the field of Topological Data Analysis. However, using these diagrams in conjunction with machine learning techniques requires some mathematical finesse. The most success to date has come from finding methods for turning persistence diagrams into vectors in $\mathbb{R}^n$ in a way which preserves as much of the space of persistence diagrams as possible, commonly referred to as featurization. In this paper, we describe a mathematical framework for featurizing the persistence diagram space using template functions. These functions are general as they are only required to be continuous, have a compact support, and separate points. We discuss two example realizations of these functions: tent functions and Chybeyshev interpolating polynomials. Both of these functions are defined on a grid superposed on the birth-lifetime plane. We then combine the resulting features with machine learning algorithms to perform supervised classification and regression on several example data sets, including manifold data, shape data, and an embedded time series from a Rossler system. Our results show that the template function approach yields high accuracy rates that match and often exceed the results of existing methods for featurizing persistence diagrams. One counter-intuitive observation is that in most cases using interpolating polynomials, where each point contributes globally to the feature vector, yields significantly better results than using tent functions, where the contribution of each point is localized to its grid cell. Along the way, we also provide a complete characterization of compact sets in persistence diagram space endowed with the bottleneck distance.